Package: Rtropical
Title: Data Analysis Tools over Space of Phylogenetic Trees Using
        Tropical Geometry
Version: 1.2.1
Authors@R: c(person("Houjie", "Wang", role = c("aut", "cre"), email = "wanghoujie6688@gmail.com"),
    	     person("Kaizhang", "Wang", role = c("aut"), email = "kaizhang.wang@outlook.com"),
    	     person("Grady", "Weyenberg", email = "gradysw@hawaii.edu", role = c("aut")),
	     person("Xiaoxian", "Tang", email = "realrootclassification2016@gmail.com", role = c("aut")),
    	     person("Ruriko", "Yoshida", email = "ryoshida@nps.edu", role = c("aut"))
    	     )
Maintainer: Houjie Wang <wanghoujie6688@gmail.com>
Description: Process phylogenetic trees with tropical support vector
        machine and principal component analysis defined with tropical
        geometry. Details about tropical support vector machine are
        available in : Tang, X., Wang, H. & Yoshida, R. (2020)
        <arXiv:2003.00677>. Details about tropical principle component
        analysis are available in : Page, R., Yoshida, R. & Zhang L.
        (2020) <doi:10.1093/bioinformatics/btaa564> and Yoshida, R.,
        Zhang, L. & Zhang, X. (2019) <doi:10.1007/s11538-018-0493-4>.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Imports: ape, lpSolve, lpSolveAPI, parallel, Rfast, RcppAlgos, caret,
        graphics, latex2exp, phangorn
Depends: R (>= 3.5.0)
Suggests: rmarkdown, knitr, e1071, testthat (>= 3.0.0)
URL: https://github.com/HoujieWang/Rtropical
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: libglpk-dev libgmp3-dev make libicu-dev libxml2-dev
Repository: https://houjiewang.r-universe.dev
Date/Publication: 2022-05-14 04:08:58 UTC
RemoteUrl: https://github.com/houjiewang/rtropical
RemoteRef: HEAD
RemoteSha: 67133042825fed9dbf23b874cfd3692661ba1b51
NeedsCompilation: no
Packaged: 2026-07-13 07:57:00 UTC; root
Author: Houjie Wang [aut, cre],
  Kaizhang Wang [aut],
  Grady Weyenberg [aut],
  Xiaoxian Tang [aut],
  Ruriko Yoshida [aut]