Tropical Data Analysis Tools

Algorithms of tropical support vector machine and principals component analysis defined in tropical projective spaces.

Installation

This package can be installed directly from Github by running

# devtools::install_github("HoujieWang/Rtropical")
install.packages("Rtropical", repos = c('https://houjiewang.r-universe.dev', 'https://cloud.r-project.org'))

Usage

Please check the vignette for a breif example.

Reference

Tang, X., Wang, H. & Yoshida, R. Tropical Support Vector Machine and its Applications to Phylogenomics https://arxiv.org/abs/2003.00677

Page, R., Yoshida, R. & Zhang L. Tropical Principal Component Analysis on the Space of Phylogenetic Trees. J. Bioinform., Volume 36, Issue 17, 4590–4598 (2020). https://doi.org/10.1093/bioinformatics/btaa564

Yoshida, R., Zhang, L. & Zhang, X. Tropical Principal Component Analysis and Its Application to Phylogenetics. Bull Math Biol 81, 568–597 (2019). https://doi.org/10.1007/s11538-018-0493-4